PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g045030.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 184aa    MW: 21240.9 Da    PI: 10.7842
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g045030.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.72.1e-30751743100
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 
                         +++++  ki T++g+RdRR+Rls++ a++fFdLq+ LGfdk+skti+WL++ ++ a  elt+ s+ + ++   ++s s+s+++++ +k+++
  Solyc03g045030.1.1  75 KRERSCGKILTAQGPRDRRIRLSINMARKFFDLQELLGFDKPSKTIDWLFTHSELALEELTNWSTHQTHRPkISGSLSKSNQQQGFRKKSQ 165
                         4666778*******************************************************97666644443333333333333332222 PP

                 TCP  93 saa.kskks 100
                         +++ ++ k+
  Solyc03g045030.1.1 166 KSKrSNTKR 174
                         222122222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.02575134IPR017887Transcription factor TCP subgroup
PfamPF036342.6E-2881172IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MFSASNSSTH DNPLPHYISS SFHTSSPFLG FTGNQILLHQ YYQNQFSSHY YLAKNNEDYC  60
DNSLRSFPMK KKSKKRERSC GKILTAQGPR DRRIRLSINM ARKFFDLQEL LGFDKPSKTI  120
DWLFTHSELA LEELTNWSTH QTHRPKISGS LSKSNQQQGF RKKSQKSKRS NTKRVKEKGK  180
STS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM9210690.0Solanum lycopersicum CYCLOIDEA2 gene, partial sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010317815.11e-107PREDICTED: transcription factor CYCLOIDEA-like
SwissprotQ9SBV62e-27CYCLD_ANTML; Transcription factor CYCLOIDEA (Fragment)
TrEMBLK4BGB51e-134K4BGB5_SOLLC; Uncharacterized protein
STRINGSolyc03g045030.1.11e-133(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.18e-22TCP domain protein 12
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]